Download EMBOSS Developer's Guide: Bioinformatics Programming by Jon C. Ison, Peter M. Rice, Alan J. Bleasby PDF

By Jon C. Ison, Peter M. Rice, Alan J. Bleasby

The ecu Molecular Biology Open software program Suite (EMBOSS) is a top quality, good documented package deal of open resource software program instruments for molecular biology. EMBOSS contains vast and extensible C programming libraries, delivering a strong and powerful toolkit for constructing new bioinformatics instruments from scratch. The EMBOSS Developer's guide is the reliable and definitive advisor to constructing software program below EMBOSS. It contains finished reference details and directions, together with step by step directions and real-world code examples: • write fully-featured instruments guided by means of the folk who built EMBOSS • step by step consultant to writing EMBOSS functions, illustrated with sensible, deployed code • ACD dossier improvement - find out how to customize latest instruments with no coding, or layout and write completely new program interfaces • EMBOSS API programming instructions - fast grasp software improvement • Wrapping and porting functions lower than EMBOSS - the right way to contain third-party instruments

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Extra info for EMBOSS Developer's Guide: Bioinformatics Programming

Sample text

1 * Library file documentation Find “String manipulation” in the table and follow the link under “Library documentation”. c/h library files). 13 1 g e tt i n g s t a r t e d The library file documentation includes the following sections: Summary A short description of the library file. Description A longer description of the library file. Data structures Name, short description and links to further information for each object (C data structure). Description of function categories Formal description of each function category, organised by object type.

9 Quality assurance guidelines Various quality assurance tests are performed on the code and documentation to maintain the quality and integrity of the package. This includes application test runs, compilation and memory leak tests and validation of the structured documentation used for objects and functions. All code should be thoroughly tested and new library code should be documented to the EMBOSS standard (see below) so that checks can be performed. 2, ‘Application quality assurance’). 10 Code and application documentation standards Software without documentation often has little value whereas good documentation can enhance the usefulness of software immensely.

Click on the Library Page tab. 2. Expand the Other databases section by clicking on the + to the left of Other databases. You will see EDATA, EDATAREL, EFUNC and EFUNCREL listed. 3. Highlight the check-box next to EMBOSS Data Structures (CVS) and then click on the Query Form tab. 4. Change one of the AllText options to ID and type a * character in its associated box, then click on Search. You will see a list of every available object. Here is a more specific search: 1. Return to the query form and replace the * by ajpstr (the AJAX string object).

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